Biomedical Research | Pathology HistoMIL: A Python package for training multiple instance learning models on histopathology slides. October 20, 2023
Proteomics Oktoberfest: Open-source spectral library generation and rescoring pipeline based on Prosit. September 6, 2023
Data Science | Medical Imaging | Radiation Oncology PyRaDiSe: A Python package for DICOM-RT-based auto-segmentation pipeline construction and DICOM-RT data conversion. February 4, 2023
Bioinformatics | Genetics | Machine Learning Gnocis: An integrated system for interactive and reproducible analysis and modelling of cis-regulatory elements in Python 3. September 26, 2022
Machine Learning | Natural Language Processing Dbias: detecting biases and ensuring fairness in news articles. September 6, 2022
Radiology pymia: A Python package for data handling and evaluation in deep learning-based medical image analysis. November 2, 2020
Bioinformatics | Enzymology | Genomics eCAMI: simultaneous classification and motif identification for enzyme annotation. December 3, 2019
Biomedical Natural Language Processing Putting hands to rest: efficient deep CNN-RNN architecture for chemical named entity recognition with no hand-crafted rules. November 14, 2018