Bioinformatics | Genomics | Oncology Rockfish: A transformer-based model for accurate 5-methylcytosine prediction from nanopore sequencing. July 3, 2024
Bioinformatics | Computational Biology | Genomics RNA m6A detection using raw current signals and basecalling errors from nanopore direct RNA sequencing reads. June 18, 2024
Bioinformatics | Computational Biology | Genetics Effective training of nanopore callers for epigenetic marks with limited labelled data. June 11, 2024
Bioinformatics | Genomics | Molecular Biology Transfer learning enables identification of multiple types of RNA modifications using nanopore direct RNA sequencing. May 14, 2024
Bioinformatics | Computational Biology | Genomics T-S2Inet: Transformer-based sequence-to-Image network for accurate nanopore sequence recognition. February 17, 2024
Bioinformatics | Computational Biology | Genomics RUBICON: a framework for designing efficient deep learning-based genomic basecallers. February 16, 2024
Bioinformatics | Genetics Detecting m6A RNA modification from nanopore sequencing using a semi-supervised learning framework. February 2, 2024
Other NanoDeep: a deep learning framework for nanopore adaptive sampling on microbial sequencing. January 8, 2024
Bioinformatics | Computational Biology | Genetics Comprehensive benchmark and architectural analysis of deep learning models for nanopore sequencing basecalling. April 11, 2023
Bioinformatics | Genetics | Molecular Biology RNA Modification Detection Using Nanopore Direct RNA Sequencing and nanoDoc2. February 13, 2023
Bioinformatics | Genomics DeepSelectNet: deep neural network based selective sequencing for oxford nanopore sequencing. January 28, 2023
Bioinformatics | Genomics | Population Genetics NanoSNP: A progressive and haplotype-aware SNP caller on low coverage Nanopore sequencing data. December 22, 2022