Bioinformatics | Genomics Decoding functional proteome information in model organisms using protein language models. July 4, 2024
Bioinformatics | Proteomics AlphaFun: Structural-Alignment-Based Proteome Annotation Reveals why the Functionally Unknown Proteins (uPE1) Are So Understudied. April 16, 2024
Bioinformatics | Genomics | Microbiology Functional annotation of enzyme-encoding genes using deep learning with transformer layers. November 14, 2023
Protein Engineering | Therapeutic design Surface ID: A Geometry-aware System for Protein Molecular Surface Comparison. April 17, 2023
Bioinformatics | Microbiology Comprehensive Functional Annotation of Metagenomes and Microbial Genomes Using a Deep Learning-Based Method. April 3, 2023
Bioinformatics | Computational Biology DeepBIO: an automated and interpretable deep-learning platform for high-throughput biological sequence prediction, functional annotation and visualization analysis. February 16, 2023
Bioinformatics | Computational Biology | Proteomics Hierarchical deep learning for predicting GO annotations by integrating protein knowledge. August 5, 2022
Bioinformatics | Microbiology Machine Learning and Deep Learning Applications in Metagenomic Taxonomy and Functional Annotation. April 1, 2022
Bioinformatics | Genomics FusionGDB 2.0: fusion gene annotation updates aided by deep learning. November 10, 2021
Bioinformatics | Genomics | Mitochondrial research Large-scale prediction and analysis of protein sub-mitochondrial localization with DeepMito. September 17, 2020
Bioinformatics | Computational Biology | Genomics Combining learning and constraints for genome-wide protein annotation. June 25, 2019
Bioinformatics | Computational Biology Protein Function Prediction Using Deep Restricted Boltzmann Machines. November 13, 2018