Bioinformatics | Genetics | Molecular Biology An updated compendium and reevaluation of the evidence for nuclear transcription factor occupancy over the mitochondrial genome. June 19, 2024
Bioinformatics | Genetics | Molecular Biology Predicting Transcription Factor Binding Sites with Deep Learning. May 11, 2024
Bioinformatics | Computational Biology | Genetics BERT-TFBS: a novel BERT-based model for predicting transcription factor binding sites by transfer learning. May 3, 2024
Bioinformatics | Computational Biology | Genetics Advancing Transcription Factor Binding Site Prediction Using DNA Breathing Dynamics and Sequence Transformers via Cross Attention. January 31, 2024
Bioinformatics | Computational Biology | Genomics DeepChIA-PET: Accurately predicting ChIA-PET from Hi-C and ChIP-seq with deep dilated networks. July 13, 2023
Other Unsupervised domain adaptation methods for cross-species transfer of regulatory code signals. April 17, 2023
Bioinformatics | Genomics Sequence characteristics and an accurate model of high-occupancy target loci in the human genome. March 22, 2023
Bioinformatics | Computational Biology | Genetics Cooperation of local features and global representations by a dual-branch network for transcription factor binding sites prediction. February 7, 2023
Bioinformatics | Computational Biology | Genetics Improving the prediction of DNA-protein binding by integrating multi-scale dense convolutional network with fault-tolerant coding. September 1, 2022
Bioinformatics | Genomics | Oncology Deep learning for de-convolution of Smad2 versus Smad3 binding sites. July 20, 2022
Bioinformatics | Genetics How deepBICS quantifies intensities of transcription factor-DNA binding and facilitates prediction of single nucleotide variant pathogenicity with a deep learning model trained on ChIP-seq data sets. April 26, 2022
Bioinformatics | Genetics Predicting the sequence specificities of DNA-binding proteins by DNA Fine-tuned Language Model with decaying learning rates. April 7, 2022