Bioinformatics | Genomics | Oncology Rockfish: A transformer-based model for accurate 5-methylcytosine prediction from nanopore sequencing. July 3, 2024
Bioinformatics | Computational Biology | Genomics T-S2Inet: Transformer-based sequence-to-Image network for accurate nanopore sequence recognition. February 17, 2024
Bioinformatics | Genetics Detecting m6A RNA modification from nanopore sequencing using a semi-supervised learning framework. February 2, 2024
Bioinformatics | Computational Biology | Genomics NanoCon: Contrastive learning-based deep hybrid network for nanopore methylation detection. February 2, 2024
Other NanoDeep: a deep learning framework for nanopore adaptive sampling on microbial sequencing. January 8, 2024
Bioinformatics | Molecular Biology Deep learning and direct sequencing of labeled RNA captures transcriptome dynamics. November 28, 2023
Genetics | Immunology | Molecular Biology Identification of Bona Fide RNA Editing Sites: History, Challenges, and Opportunities. October 12, 2023
Bioinformatics | Genomics | Molecular Biology DNA 5-methylcytosine detection and methylation phasing using PacBio circular consensus sequencing. July 8, 2023
Bioinformatics | Genomics | Population Genetics NanoSNP: A progressive and haplotype-aware SNP caller on low coverage Nanopore sequencing data. December 22, 2022
Bioinformatics | Computational Biology | Genomics DeepMP: a deep learning tool to detect DNA base modifications on Nanopore sequencing data. October 31, 2021
Bioinformatics | Biotechnology | Genomics SquiggleNet: real-time, direct classification of nanopore signals. October 28, 2021
Bioinformatics | Genomics | RNA Biology Molecular barcoding of native RNAs using nanopore sequencing and deep learning. September 10, 2020